Bioinformatics and Biomedical Engineering

docking.- Hidden Markov Model (HMM) for Biological Sequence Modeling Strong Inhomogeneity in Triplet Distribution Alongside a Genome.- Predicting sub-cellular location of proteins based on hierarchical clustering and hidden Markov models.- Advances in Computational Intelligence for Bioinformatics and Biomedicine.- Multi genetic risk quantification for SNP array based direct-to-consumer genomic services.- Computational inference in systems biology.- A Price we Pay for Inexact Dimensionality Reduction.- An Ensemble of Cooperative Parallel Metaheuristics for Gene Selection in Cancer Classification.- Tools for Next Generation Sequencing data analysis DEgenes Hunter - A self-customised gene expression analysis workflow for non-model organisms.- Bioinformatics Analyses to Separate Highly Divergent mRNAs from Unknown Sequences in de novo Assembled Transcriptomes.- Evaluation of combined genome assemblies: a case study with fungal Genomes.- Using multivariate analysis and bioinformatic tools to elucidate the functions of a cyanobacterial global regulator from RNA-Seq data obtained in different genetic and environmental backgrounds.- HvDBase: a web resource on Hydra Vulgaris transcriptome.- Nucleotide Sequence Alignment and Compression via Shortest Unique Substring.- Dynamics networks in system medicine Modeling of the Urothelium with an Agent Based Approach.- Systematic comparison of machine learning methods for identification of miRNA species as disease biomarkers.- Numerical Investigation of Graph Spectra and Information Interpretability of Eigenvalues.- Interdisciplinary puzzles of measurements in biological systems Mixture model based efficient method for magnetic resonance spectra quantification.- Noise and baseline ltration in mass spectrometry.- BioWes from design of experiment, through protocol to repository: control, standardization, and back-tracking.- Measurement in biological systems from the self - organisation point of View.- FRAP & FLIP: Two sides of the same coin?.- Biological Networks: Insight from interactions MicroRNA Target Prediction Based upon Metastable RNA Secondary Structures.- Inference of Circadian Regulatory Pathways based on Delay Differential Equations.- Towards an effective telemedicine: an interdisciplinary approach.- Simplifying tele-rehabilitation devices for their practical use in non-clinical environments.- Non-intrusive patient monitoring for supporting general practitioners in following diseases evolution.- Interactive business models for Telerehabilitation after Total Knee Replacement: Preliminary results from Tuscany.- Ontological Personal Healthcare using Medical Standards.- High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry.- Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry.- Computing Biological Model Parameters by Parallel Statistical Model Checking.- Mobile access to on-line analytic bioinformatics tools.- isDNA: A tool for real-time visualization of plasmid DNA Monte-Carlo simulations in 3D.- Transport Properties of RNA Nanotubes using Molecular Dynamics Simulation.- Molecular Dynamics Simulations of Ligand Recognition upon Binding Antithrombin: A MM/GBSA Approach.- Predicting atherosclerotic plaque location in an iliac bifurcation using a hybrid CFD/biomechanical approach.- Identification of Biologically Significant Elements using Correlation Networks in High Performance Computing Environments.- Enhancing the parallelization of Non-Bonded Interactions Kernel for Virtual Screening on GPUs.- Advances in Drug Discovery.- Prediction of Functional Types of Ligands for G Protein-Coupled Receptors with Dynamically Discriminable States Embedded in Low Dimension.- Improving activity prediction of Adenosine A2B receptor antagonists by machine learning methods.- Support Vector Machines Prediction of drug solubility on GPUs.- DIA-DB: a web-accessible database for the prediction of diabetes drugs.- Molecular docking and Biological evaluation of functionalized benzo[h]quinolines as Colon cancer agents.- Predicting cross-reactivity from computational studies for pre-evaluation of specific hepatic glycogen phosphorylase inhibitors.- Ambient Intelligence for Bioemotional Computing Externalising Moods and Psychological States to Smooth Pet-robot/Child Interaction through Bluetooth Communication.- Patient Lifecycle Management: An Approach for Clinical Processes.- Advertising liking recognition technique applied to neuromarketing by using low-cost eeg headset.- Heart Rate Variability indicating Stress visualized by Correlations Plots.- Emotions and Diabetes.