Bioinformatics Research and Applications

Next generation sequencing data analysis.- An Efficient Algorithm for finding all pairs k-mismatch maximal common substrings.- Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads.- FSG: Fast String Grap Construction for De Novo Assembly of reads data 25.- OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads.- High performance sensing of DNA hybridization on surface of self-organized MWCNT-arrays decorated by organometallic complexes.- Towards a more accurate error model for BioNano optical maps.- HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.- Protein-protein interactions and networks.- Genome-Wide Structural Modeling of Protein-Protein Interactions.- Identifying essential proteins by purifying protein interaction networks.- Differential functional analysis and change motifs in gene networks to explore the role of anti-sense transcription.- Predicting MicroRNA-disease associations by random walking on multiple networks.- Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees.- Protein and RNA structure.- Consistent visualization of multiple rigid domain decompositions of Proteins.- A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts.- Filling a protein scaffold with a reference.- Phylogenetics.- Mean values of gene duplication and loss cost functions.- The SCJ small parsimony problem for weighted gene adjacencies.- Path-Difference Median Trees.- NEMo: An Evolutionary Model with Modularity for PPI Networks.- Multi-Genome Scaffold Co-Assembly Based on the Analysis of Gene Orders and Genomic Repeats.- Sequence and image analysis.- Selectoscope: a modern web-app for positive selection analysis of genomic data.- Methods for Genome-wide Analysis of MDR and XDR Tuberculosis from Belarus.- Haplotype Inference for Pedigrees with Few Recombinations.-