Pattern Recognition in Bioinformatics

Protein: Structure, Function, and Interaction.- Sequence Based Prediction of Protein Mutant Stability and Discrimination of Thermophilic Proteins.- A Method to Find Sequentially Separated Motifs in Biological Sequences (SSMBS).- Predicting SUMOylation Sites.- DFS Based Partial Pathways in GA for Protein Structure Prediction.- Evaluation of the Stability of Folding Nucleus upon Mutation.- Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach.- Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types.- Extraction of Binding Sites in Proteins by Searching for Similar Local Molecular Surfaces.- Learning, Classification, and Clustering.- A Clustering Based Hybrid System for Mass Spectrometry Data Analysis.- A Modified Markov Clustering Approach for Protein Sequence Clustering.- Feature Selection and Classification for Small Gene Sets.- Pseudoknot Identification through Learning TAGRNA.- Support Vector Based T-Score for Gene Ranking.- Prediction of Transcription Factor Families Using DNA Sequence Features.- g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines.- Bio-Molecular Networks and Pathways Analysis.- Domain-Domain Interaction Identification with a Feature Selection Approach.- Dividing Protein Interaction Networks by Growing Orthologous Articulations.- Constraint Minimization for Efficient Modeling of Gene Regulatory Network.- Fusion of Gene Regulatory and Protein Interaction Networks Using Skip-Chain Models.- TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees.- Generating Synthetic Gene Regulatory Networks.- Microarray and Gene Expression Analysis.- Gene Selection for Microarray Data by a LDA-Based Genetic Algorithm.- Sequential Forward Selection Approach to the Non-unique Oligonucleotide Probe Selection Problem.- On Finding and Interpreting Patterns in Gene Expression Data from Time Course